PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C021692P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family M-type_MADS
Protein Properties Length: 220aa    MW: 24835.6 Da    PI: 9.1874
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C021692P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.74.1e-151152344
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    i n+  r+ tf kR++g+lKK  EL +LC++e++ iif +++
  MELO3C021692P1 11 ITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSN 52
                    89************************************8876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.605152IPR002100Transcription factor, MADS-box
SMARTSM004327.7E-24160IPR002100Transcription factor, MADS-box
CDDcd002663.73E-21285No hitNo description
SuperFamilySSF554553.14E-24295IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-10323IPR002100Transcription factor, MADS-box
PfamPF003193.7E-171152IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MTRKKVKLAY ITNDASRKAT FKKRKKGLLK KLAELTTLCG IEACAIIFNP SNSQPDLWPS  60
TLGLQKVLSK FKSLPEMEQC KKMVNQETFL RDRIAKAADQ LKKLQRENRE KEITRLMFQS  120
LVAGATPPPD LNVIDLNDLG WLVDQKMADI GKRMESLTVN RSSSHVATNE PSWFMEMVNQ  180
GGNDEDHMGF NIGDDVIQLP SFGEYDNHGT FWSNNVIFP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYITNDASRKATFKKRK
21631RKATFKKRKKGLLKKL
32125KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819310.0LN681931.1 Cucumis melo genomic scaffold, anchoredscaffold00049.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008458956.11e-164PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-56AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0A0LVU51e-143A0A0A0LVU5_CUCSA; Uncharacterized protein
STRINGPOPTR_0005s00420.12e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-49AGAMOUS-like 80